Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRC | rs16955507 | chr15:71656723 | C/T | 0 | 509 | 37.73 | 26.27 | 1.4 | KM Plot |
| KIRC | rs16966921 | chr18:33205897 | C/T | 3.23E-5 | 509 | 7.37 | 31.77 | 37.75 | KM Plot |
| KIRC | rs16967009 | chr18:33270247 | A/G | 3.29E-5 | 509 | 37.83 | 29.13 | 7.37 | KM Plot |
| KIRC | rs169739 | chr6:33483312 | C/A | 3.55E-6 | 493 | 37.5 | 39.62 | 3.67 | KM Plot |
| KIRC | rs16979994 | chr19:14983924 | C/T | 6.99E-7 | 509 | 37.47 | 37.77 | 1.73 | KM Plot |
| KIRC | rs16980027 | chr19:46313105 | C/T | 7.94E-8 | 496 | 38.47 | 28.65 | 1.77 | KM Plot |
| KIRC | rs16980059 | chr19:46353634 | C/T | 9.84E-8 | 505 | 38.1 | 28.65 | 1.77 | KM Plot |
| KIRC | rs16986509 | chr22:28943477 | A/G | 0.000127 | 509 | 6.73 | 36.2 | 37.5 | KM Plot |
| KIRC | rs17018511 | chr1:212277604 | C/T | 5.09E-6 | 509 | 38 | 28.78 | 17.28 | KM Plot |
| KIRC | rs17020526 | chr2:109393854 | G/A | 3.05E-12 | 507 | 37.77 | 26.17 | 2.3 | KM Plot |
| KIRC | rs17029374 | chr1:6387237 | G/A | 8.22E-11 | 503 | 37.37 | 39.7 | 2.3 | KM Plot |
| KIRC | rs170369 | chr4:12938532 | C/T | 2.89E-5 | 507 | 36.72 | 46.15 | 3.53 | KM Plot |
| KIRC | rs17037069 | chr4:107838076 | A/G | 1.81E-7 | 509 | 37.73 | 29.5 | 7.1 | KM Plot |
| KIRC | rs17037141 | chr4:107880073 | G/T | 4.2E-11 | 509 | 37.73 | 32.17 | 5.53 | KM Plot |
| KIRC | rs17037144 | chr4:107882594 | T/C | 4.15E-11 | 508 | 37.73 | 30.9 | 5.53 | KM Plot |